Insertion junction: CLIP2.040144_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040144
Chromosome:chromosome 9
Location:3584025
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g396698 (1 of 22) PTHR11017//PTHR11017:SF145 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAAGGATAGAAGGAAGGCGGCGGGTAGGTTGAGGTAGGCAGAGAGTTC
Internal bar code:GTAATTCTTCAGGTTTTCGGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2067
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGGCGCCAGTAGTCTTTA
Suggested primer 2:AACATGACAGCGCTCCTCAA