Insertion junction: CLIP2.040169_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040169
Chromosome:chromosome 2
Location:6646296
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g389900 HRP4 Hydroxyproline-rich glycoprotein; (1 of 1) PTHR15744//PTHR15744:SF0 - BLOM7 // UPF0469 PROTEIN KIAA0907 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGCGCCACTCTCTGCTCCAGCGCCTGGAGGCGTGGACATCGCAGCTGC
Internal bar code:GATTCGATTAGCGGTCTCATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1814
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTTCTCTGCATCCGTCTG
Suggested primer 2:CGAGGAGGGTTGTTCTTCCC