Insertion junction: CLIP2.040176_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040176
Chromosome:chromosome 12
Location:2480483
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g507350 (1 of 781) IPR000104 - Antifreeze protein, type I intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTTGCACCCCCTCCACCACCCCAACCCCATCACTTCGGCCTGCCCTTG
Internal bar code:GGGATGGGTCGTGAAAATGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:93
LEAP-Seq percent confirming:45.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGTGCGTGGTGTGTGTAC
Suggested primer 2:ACCAGGTCGTTGTTCTCGTC