Insertion junction: CLIP2.040178_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.040178
Chromosome:chromosome 17
Location:2771259
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g717950 PHC28,PHC6 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Pherophorin-chlamydomonas homolog 6 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGTTCAGACCCAGCGTGATGCAGACCTGGGCGCCGTCGTTGCCCAGCC
Internal bar code:ATTGAAAGGGGGTTGGCGCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1333
LEAP-Seq percent confirming:22.8916
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:64
LEAP-Seq n unique pos:83

Suggested primers for confirmation by PCR

Suggested primer 1:ATTCGCAGCTACTAGACGGC
Suggested primer 2:TTGTTCTCGGGGTCAACCAG