Insertion junction: CLIP2.040198_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040198
Chromosome:chromosome 2
Location:4490230
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800228 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACACCGTACCGCGAGACCGGCTTGCCGCGCTTTCACATGCGGCACCA
Internal bar code:ATAGGGGATCGAGTGTGGTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2456
LEAP-Seq percent confirming:8.21918
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:67
LEAP-Seq n unique pos:73

Suggested primers for confirmation by PCR

Suggested primer 1:TCTTTTCTGCTCGCGTGTCT
Suggested primer 2:AGTCACACACGCTTCACCAA