Insertion junction: CLIP2.040279_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.040279
Chromosome:chromosome 13
Location:2785439
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g801538 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGGTGCCAGTAGCTCTCATCTGAGCTTTCTGTCCTAACATATCCCGTC
Internal bar code:CGCGCGGGCCGGTCAATGGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3368
LEAP-Seq percent confirming:52.2124
LEAP-Seq n confirming:59
LEAP-Seq n nonconfirming:54
LEAP-Seq n unique pos:113

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAAGGCGAGGACGAGATC
Suggested primer 2:GTCCGAAACGTCACCCTTCT