Insertion junction: CLIP2.040329_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.040329
Chromosome:chromosome 2
Location:566613
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g076987 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCGTGCCTACTGCTGTGCTTGCCGATGTCAAAACCGTTCATGACGCCT
Internal bar code:GACTATCATATCTTTTCTGCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:975
LEAP-Seq percent confirming:93.5484
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCCACAGCTATCCTGGTA
Suggested primer 2:CAGACGGAACTGTCGACACA