Insertion junction: CLIP2.040387_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.040387
Chromosome:chromosome 8
Location:2899003
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g374250 SAG1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Plus agglutinin protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGGCGCCGCCGCCGCCGCCCTCGCCGCCGTCGCCAAGGCCGCCCCGGC
Internal bar code:GACCTTATCTAGTGACGGGTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:2024
LEAP-Seq percent confirming:75.8621
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CTATCTGGGCTGGGTGGGT
Suggested primer 2:GCAGCAGTGTGTTCAAGTGG