Insertion junction: CLIP2.040402_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040402
Chromosome:chromosome 3
Location:2482145
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g159200 UBC8 (1 of 2) K10589 - ubiquitin-protein ligase E3 C (UBE3C); Putative ubiquitin-protein ligase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAACTCACGTGACGGGCTCGTCGCCGCGGCCCGGCAGCAGCTCGTGGTGC
Internal bar code:ACGGTAGCCCTTCGCATTTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2171
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTGCACACCATATTGCCT
Suggested primer 2:GCTGTACTTTGCATAGCGCC