Insertion junction: CLIP2.040406_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040406
Chromosome:chromosome 3
Location:7261873
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g207500 CDS
Cre03.g207502 (1 of 7) K18932 - palmitoyltransferase (ZDHHC) 3'UTR
Cre03.g207550 ADH8,CAD2 Cinnamyl-alcohol dehydrogenase; (1 of 2) 1.1.1.195 - Cinnamyl-alcohol dehydrogenase / CAD outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTATATGGCTGTGGAAGTACACCGTCCGTCTTGCTTTGGGAGCATGGAG
Internal bar code:TACTTGTGATCGGAGCAAGACG

Confirmation - LEAP-Seq

LEAP-Seq distance:2652
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTTCGGCATCGTCCATTC
Suggested primer 2:GCAGCAATTACGTGTAGCGG