Insertion junction: CLIP2.040416_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040416
Chromosome:chromosome 16
Location:7959131
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00188039

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGCGGAGGTCAATGGGTGCATTGGGCGAAGACCTGGGTCTGGAGTTTA
Internal bar code:CCGTAGTACTTGGACTCTTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2532
LEAP-Seq percent confirming:97.3684
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:CCACGTCACTCATCACACCA
Suggested primer 2:TCACGTTTGTACAGCTGGGG