Insertion junction: CLIP2.040416_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.040416
Chromosome:chromosome 16
Location:7959136
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00188039

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAACCCAAACAGAGGCAGGAAGGCACGCAAAGAACGTACGCACCACCTT
Internal bar code:CCGTAGTACTTGGACTCTTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1933
LEAP-Seq percent confirming:44.4444
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:TCACGTTTGTACAGCTGGGG
Suggested primer 2:CCACGTCACTCATCACACCA