Insertion junction: CLIP2.040491_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.040491
Chromosome:chromosome 15
Location:1779239
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00246699

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATGGCACGCACGGGCGGTGCCCCCTTGCGCTCATGGGTGCGCTTTGGG
Internal bar code:TGGGCAGCCCGCTATTGGCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1024
LEAP-Seq percent confirming:70.8333
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:TGAAACCGGATGACGTGAGG
Suggested primer 2:CGGCTCGCATTTGTAGTGTG