Insertion junction: CLIP2.040511_4

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.040511
Chromosome:chromosome 12
Location:9340175
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g541904 (1 of 1) PF08755//PF13369 - Hemimethylated DNA-binding protein YccV like (YccV-like) // Transglutaminase-like superfamily (Transglut_core2) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTGATGGATGCGGACCGGCACTCATGCAAGAGGATGCAAGCAGGGTTG
Internal bar code:ATTCCGGAGTAATAGGTCGTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1070
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TTTCTGCGGTTGCTCTTTGC
Suggested primer 2:CTCCTGCATCACCTCCACTG