Insertion junction: CLIP2.040537_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040537
Chromosome:chromosome 17
Location:2561149
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716050 (1 of 1) PTHR20953:SF2 - PROTEIN SEEDLING PLASTID DEVELOPMENT 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACAGCTTATGGGGACGTCGATGCCGCGGGGCAGCGGCATGGGGAGGGTG
Internal bar code:GTTAGTAGTGGGATCTTGGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1909
LEAP-Seq percent confirming:65.7895
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTGATGGTGGCTGACTCG
Suggested primer 2:CATGCAGGTGTGTGTGTGTG