Insertion junction: CLIP2.040541_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.040541
Chromosome:chromosome 10
Location:1680417
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g429750 FAP417 (1 of 1) IPR000014//IPR000104 - PAS domain // Antifreeze protein, type I; Flagellar Associated Protein 417 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCAATGGGGTCCTTGAACCGGTAAATGTCCTTCACCTTGCTGCCGGGG
Internal bar code:ACCGTTGAGGATGCGCGAGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:426
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGCCTTCACTCACACTCT
Suggested primer 2:CGCTCCATGTAGTTGGGGTT