Insertion junction: CLIP2.040552_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.040552
Chromosome:chromosome 13
Location:3392281
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g586700 FXL2 FixL-like PAS domain protein; (1 of 12) 2.7.13.3 - Histidine kinase / Protein kinase (histidine) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTCTGGAGGAGCGCATGCCCCAGTGGCTAAATAAACCACCGCTTCATT
Internal bar code:TCCAGATTGTTAACGCCGCGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:408
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTGCCGAACACCAGGTAT
Suggested primer 2:AACAGAGGCGCAGGTAGTTC