Insertion junction: CLIP2.040623_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040623
Chromosome:chromosome 3
Location:5020129
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g179860 (1 of 1) 2.1.1.203 - tRNA (cytosine(34)-C(5))-methyltransferase; tRNA-(m5C) methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGAGATCGTTAGCTCTTGGCCCCAAGCCAACCTCCTGTCATCAAACCCA
Internal bar code:AAATGATTCCTAGCGACACGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1430
LEAP-Seq percent confirming:92.5
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:CACATAAAGACGGCCATGCG
Suggested primer 2:GCCATTGCACGTGTGTCAAT