Insertion junction: CLIP2.040628_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040628
Chromosome:chromosome 3
Location:6850774
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g197550 TMEM48,NDC1 (1 of 1) K14315 - nucleoporin NDC1 (NDC1, TMEM48); Nuclear pore protein NDC1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGCGCACTTGGATTTCGCTCTTCTTGACACGCGTGGTCGTGCGCGGGC
Internal bar code:TGGCAGGAGTGCAACGACTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:4087
LEAP-Seq percent confirming:86.5854
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:82

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCAGCCTCTCTGTGAACA
Suggested primer 2:CGTCAGGCATCATTCAAGCG