Insertion junction: CLIP2.040683_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.040683
Chromosome:chromosome 7
Location:3979768
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g800824 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCATCCTGACACACGTCCATTCACCAACGCCGCCCCACGTGTATCAGTT
Internal bar code:GGAGGTTAGGGCTGGGTTCGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:3424
LEAP-Seq percent confirming:17.8571
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGTGATTGCCAAGTTGAA
Suggested primer 2:CATGTGGGCTGGCATCAAAC