Insertion junction: CLIP2.040727_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040727
Chromosome:chromosome 9
Location:5876419
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g411850 (1 of 2) PTHR23130:SF61 - DEFENSE PROTEIN L(2)34FC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTGCATGCAAACGATGACATCTCATTCATTCTCATACATGTAGCTCAA
Internal bar code:CAGTTGTGTCAGCCTGACTCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:2842
LEAP-Seq percent confirming:96.3636
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:TCCCTTCATCCTCACGCCTA
Suggested primer 2:CGGTCGTTTCGGTTGAGGTA