Insertion junction: CLIP2.040831_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.040831
Chromosome:chromosome 10
Location:1259826
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801114 (1 of 2) IPR003072//IPR003882 - Orphan nuclear receptor, NOR1 type // Pistil-specific extensin-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCGCAGTCGTTCAAGCCGACACCCAGGACGTGCGCCCCAGAAACGACCT
Internal bar code:GGAGACGAAACGTATGAAATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3006
LEAP-Seq percent confirming:98.8636
LEAP-Seq n confirming:87
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:88

Suggested primers for confirmation by PCR

Suggested primer 1:GTACACAACACGCACCACAC
Suggested primer 2:TCAAAGGGCTGCTCAGACAG