Insertion junction: CLIP2.040842_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.040842
Chromosome:plastome
Location:174621
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTG
Internal bar code:CTGTAGCCGTGATTCTACGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:196
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGTGTCGCACCCACTTAA
Suggested primer 2:TGACTGGCTTCGTCAAGACC