Insertion junction: CLIP2.040883_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.040883
Chromosome:chromosome 1
Location:4600804
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g031800 (1 of 1) PTHR23083//PTHR23083:SF433 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCTAGGGCGAGTTCTAGCCGGGATCCAGGCAGTGCGCTGGCGCCGAGGG
Internal bar code:TCTACTGCCCCATACCCAACTC

Confirmation - LEAP-Seq

LEAP-Seq distance:620
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GGGAATAACGAGTGGTGCCA
Suggested primer 2:TTCAGAGACTCCTCCTCCGG