Insertion junction: CLIP2.040916_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.040916
Chromosome:chromosome 17
Location:3569403
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g724950 (1 of 1) PTHR16161:SF0 - TRANSCRIPTIONAL PROTEIN SWT1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGCGCCTGCGCTTGCGCCATCGGCGCCGCCGCTGCCGCCGCCTGCGCT
Internal bar code:TCCTCGATCTGCCAACAGCAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:6321
LEAP-Seq percent confirming:95.9184
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCAATGACGACTGTGTGA
Suggested primer 2:TCACGACTCACTTGACCAGC