Insertion junction: CLIP2.040918_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.040918
Chromosome:chromosome 2
Location:1622896
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g085150 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGACGCCGCCCCGCCCCGCCAGCGCCGCAGCAAAGGCGCGTCAGCAGC
Internal bar code:TCATCGAATCCTATCTCCCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1000
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAGGAAGACCCAGATCGC
Suggested primer 2:CAATTGCACATATCGCCGCA