Insertion junction: CLIP2.040940_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.040940
Chromosome:chromosome 10
Location:4905636
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g453750 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAAGAACCTCGAGAGCATGGTCGTCGAGTTGCGCCATACTCGCTACTTG
Internal bar code:AGAATGAGCCGATTAGTCCTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:4560
LEAP-Seq percent confirming:78.8235
LEAP-Seq n confirming:67
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:85

Suggested primers for confirmation by PCR

Suggested primer 1:TGACGTGCGATCGGAGTATG
Suggested primer 2:TCTAACAACGCCACCTGACC