Insertion junction: CLIP2.041015_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.041015
Chromosome:chromosome 2
Location:4139654
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g103750 intron
lncRNA_TCONS_00041505 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTATGATGCATGGATAGGCTGGCTTTCTGAAACTCAAGTGTGAGGGACTT
Internal bar code:GTGTGACAGCTCTAATAGTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2351
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCTATCCTTGCAACACCA
Suggested primer 2:GTTCCACTTTTCAGCGCGTT