Insertion junction: CLIP2.041053_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.041053
Chromosome:chromosome 12
Location:2415271
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g507650 CDJ1 (1 of 1) PTHR24078//PTHR24078:SF315 - DNAJ HOMOLOG SUBFAMILY C MEMBER // MOLECULAR CHAPERONE DNAJ; Chloroplast DnaJ-like protein 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTACTAACACCCCCCCTCGTGCATAATTCACTCCTCCGTTCATGGACGG
Internal bar code:TTCTGAGGGTAAATTATAGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1202
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CGAAACGCATCTCGCTCAAG
Suggested primer 2:CCGGGTGAGGTACAACATCC