Insertion junction: CLIP2.041078_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.041078
Chromosome:chromosome 3
Location:5972543
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189200 (1 of 1) PTHR13192//PTHR13192:SF3 - MY011 PROTEIN // METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE D PROTEIN, MITOCHONDRIAL intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCGGCGCAGCCCTCCGACGCCGCTGCCTGCCTGCGCCGCCTCCCCCA
Internal bar code:GGGCATCGTGGCGTCATATGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:457
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCCTGTTCCTGTAAAGGG
Suggested primer 2:CCTGCACACACTTCAAACGG