Insertion junction: CLIP2.041078_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.041078
Chromosome:chromosome 3
Location:5972543
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189200 (1 of 1) PTHR13192//PTHR13192:SF3 - MY011 PROTEIN // METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE D PROTEIN, MITOCHONDRIAL intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTGGGCCGGGGCCGCGCGTGCAGGTGCACTGAGCGCCGGGGCCCTTGCC
Internal bar code:GATTTCTCAAAGTTTGTTCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3050
LEAP-Seq percent confirming:79.4872
LEAP-Seq n confirming:62
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:78

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGCACACACTTCAAACGG
Suggested primer 2:ACGCCTGTTCCTGTAAAGGG