Insertion junction: CLIP2.041080_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.041080
Chromosome:chromosome 13
Location:1364859
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g571580 CSB53 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon); {"Probable transposon-derived protein of Chlamydomonas-Specific family B intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGGACGGCTGGGCACTGGGGACGGATTGATTGACAGGTTGACGGTTGG
Internal bar code:CTCTCCATCATAATTTAAGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:6177
LEAP-Seq percent confirming:90.5983
LEAP-Seq n confirming:106
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:117

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCTACTCACTCCGATGCG
Suggested primer 2:GGGCAGTGAGGCAACAAAAG