Insertion junction: CLIP2.041105_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.041105
Chromosome:chromosome 8
Location:351093
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g358575 TRP7 Transient receptor potential ion channel protein; (1 of 1) IPR000104//IPR002110//IPR005821//IPR020683 - Antifreeze protein, type I // Ankyrin repeat // Ion transport domain // Ankyrin repeat-containing domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCGCCGATGCTGTCTGCCGCCGCCGCGCCTGCTGTGGCGGGCACTGCAG
Internal bar code:CCGGATGCACTTCTCTATCCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:840
LEAP-Seq percent confirming:54.5455
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCTCGAGGATGAATGCCC
Suggested primer 2:GCAACAGCAGCTAGGAGTGA