Insertion junction: CLIP2.041138_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.041138
Chromosome:chromosome 3
Location:5737987
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g187250 (1 of 1) PF05514 - HR-like lesion-inducing (HR_lesion) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGGAACTGGGCTGGCAGCTCGACGCCCAGTTGCCGCAGCGCCGTTACC
Internal bar code:GTTCGGTGTCTTGAGTTCTGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:851
LEAP-Seq percent confirming:70.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TGAGCGCTATTTGGACAGCA
Suggested primer 2:GCAAGCGTCAGTATGCCATG