Insertion junction: CLIP2.041195_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.041195
Chromosome:chromosome 9
Location:5749903
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g410750 NIR1,NII1 Nitrite reductase, chloroplastic; (1 of 1) 1.7.7.1 - Ferredoxin--nitrite reductase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCCCACCGCCGCTGCTGCCTCCACCACGTGTGTGCAGGGCCGCGAGGA
Internal bar code:TAGGTACGTTAGCTGTAGAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4107
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:GGATGGACATGATGTTGCGC
Suggested primer 2:GATGTAGGTTGGGGGTTGGG