Insertion junction: CLIP2.041300_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.041300
Chromosome:chromosome 17
Location:1645507
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g707750 (1 of 1) PTHR31040//PTHR31040:SF1 - FAMILY NOT NAMED // NURIM intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCTGCACACCCAGAAATGTCGTACAGTCCGTATTGTTGACTAAATCGT
Internal bar code:AAGCAGGTGCGATTCTCAGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1557
LEAP-Seq percent confirming:82.3529
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:AGTACACGTTGAGCACCAGG
Suggested primer 2:ACACCTCTTGATGGTCTGCG