Insertion junction: CLIP2.041415_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.041415
Chromosome:chromosome 2
Location:5781741
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g116950 HDA1 RPD3/HDA1 type histone deacetylase; (1 of 2) 3.5.1.4 - Amidase / Acylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGAAGACGAGGGGCCGGGGACCATCGTGAGCGCTCCTGTGCCACCAGCG
Internal bar code:ACAATTAGGGTGGTAATTTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2051
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGGCTGGAACTTACGACC
Suggested primer 2:AAATGTACGGCCAGGTCAGG