Insertion junction: CLIP2.041521_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.041521
Chromosome:chromosome 8
Location:3243988
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g377050 (1 of 1) 4.6.1.14 - Glycosylphosphatidylinositol diacylglycerol-lyase / VSG-lipase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGCGGAAGCGGCCGGGGGACATGCCGCATGCAGTCCGGACGCAGCCGC
Internal bar code:ATAGTTATCTTTACTCTTTCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:171
LEAP-Seq percent confirming:8.33333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GACAAGGTCCGAGTCCGTTT
Suggested primer 2:GAAGTCAGACACGTCCTGCA