Insertion junction: CLIP2.041546_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.041546
Chromosome:chromosome 17
Location:676750
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g700500 (1 of 1) PTHR23196//PTHR23196:SF13 - PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGCCACCACGCCGCTCCTGCTCCTGCTCCTCCTCCCCCTGCTGCAGTG
Internal bar code:CGCGCCGCCGAACAGTCGTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:909
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCTACAAACCGTCACCT
Suggested primer 2:TTGTTGTTGCTGCTGTTCCG