Insertion junction: CLIP2.041709_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.041709
Chromosome:chromosome 16
Location:7530687
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g683035 (1 of 2) IPR003593//IPR027417 - AAA+ ATPase domain // P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATACCGATGGCTGTTAGTGATTTGGCACACCTCATTGGCCACCTGGACA
Internal bar code:TTAAAGAGGTCACTCGGCCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:5432
LEAP-Seq percent confirming:86.6667
LEAP-Seq n confirming:52
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:GTCCAAAGTTGTTGCGGCAT
Suggested primer 2:TGGTTCCTCAGACAATGCCC