Insertion junction: CLIP2.041821_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.041821
Chromosome:chromosome 7
Location:130032
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g313000 (1 of 2) 2.7.7.48 - RNA-directed RNA polymerase / RNA nucleotidyltransferase (RNA-directed) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGCGGCGAGGGGCGCCATGGCCGCACACACGGCGTTGCGCAGGCGAGC
Internal bar code:AAAGCTAGCTAAATCACGTTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1568
LEAP-Seq percent confirming:70.8333
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGCTCCAAACGCAATGCA
Suggested primer 2:TGCCCACATCCTACACACAC