Insertion junction: CLIP2.041833_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.041833
Chromosome:chromosome 16
Location:5807617
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g680100 (1 of 1) 2.1.1.177 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase / rRNA large subunit methyltransferase H intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGGCTGCTCTTGAACCCTTGAACCCTTGTCCCTGTCGGTCTCCCCCGC
Internal bar code:TGATGTAGGTTGGGTTAGTACT

Confirmation - LEAP-Seq

LEAP-Seq distance:638
LEAP-Seq percent confirming:18.1818
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCATGTGGCACTCAAGAT
Suggested primer 2:CATACGGGCTCGGTAGACAC