Insertion junction: CLIP2.041888_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.041888
Chromosome:chromosome 10
Location:1167921
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g425750 (1 of 1) PTHR11227:SF18 - WD REPEAT DOMAIN PHOSPHOINOSITIDE-INTERACTING PROTEIN 3 CDS
lncRNA_TCONS_00063058 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGACAGAGCGCCACGAGAGAAAGGAAAACACAAACCCTGGCGAGCGACC
Internal bar code:TCCACCTTAGCTTAGCCCAAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:734
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CCCAATGCACTTCCCCTGAT
Suggested primer 2:AGTGAGATGGGAGGAGGGAC