Insertion junction: CLIP2.042105_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.042105
Chromosome:chromosome 10
Location:5759487
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g459900 PFH4,PHX16,P4H4 Prolyl 4-hydroxylase 4; (1 of 5) PTHR10869//PTHR10869:SF55 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // OXOGLUTARATE/IRON-DEPENDENT OXYGENASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCGGTTTAGTCTGGTCTGGTATCTACAACCTCCCGCACTTGCCGCACC
Internal bar code:TACGGGGCGGCACAGATTTACA

Confirmation - LEAP-Seq

LEAP-Seq distance:1049
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:AACCGCAAAACAAGCATCCC
Suggested primer 2:AACACGGTGGCGTATCTGTT