Insertion junction: CLIP2.042116_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.042116
Chromosome:chromosome 9
Location:6349879
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g414350 (1 of 3) PF04824//PF04825 - Conserved region of Rad21 / Rec8 like protein (Rad21_Rec8) // N terminus of Rad21 / Rec8 like protein (Rad21_Rec8_N) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATCCCAGACAAAAGCGCCCACCTGCAGCCGCCGCAGTACGGCCCGGGT
Internal bar code:GTGGTCAGTGTACCGATTGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1283
LEAP-Seq percent confirming:83.7838
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTCCAACAGTAGTGCCGG
Suggested primer 2:AGCTCCGTTGCAGTAGTCAC