Insertion junction: CLIP2.042222_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.042222
Chromosome:chromosome 11
Location:2481049
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g095111 VSR1 Vacuolar Sorting Receptor; (1 of 1) PTHR22765//PTHR22765:SF56 - RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING // VACUOLAR-SORTING RECEPTOR 5-RELATED 5'UTR
Cre02.g095113 DIV24,TFCE1,TFC-E Tubulin-folding cofactor subunit; (1 of 1) IPR000938//IPR029071 - CAP Gly-rich domain // Ubiquitin-related domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGACGATCCGCCGCCCTGAGCTGCTCCGCCAGCCGCTGCTCGTGCGCCGC
Internal bar code:GAAATACCCACCCCAGAAATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1306
LEAP-Seq percent confirming:82.0
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCATGCATAGCAACACG
Suggested primer 2:CGCTGTTGAGGTCAGAAGGT