Insertion junction: CLIP2.042288_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.042288
Chromosome:chromosome 2
Location:6996221
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g389541 OPR9 OctotricoPeptide Repeat protein 9; (1 of 1) IPR000104//IPR011237//IPR011335//IPR013584 - Antifreeze protein, type I // Peptidase M16 domain // Restriction endonuclease type II-like // RAP domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATCAAAATTGGGGGGCAGCACGTGGTGCTTGAGGTTGATGTGGGCATG
Internal bar code:CTAGGCAGGTTTAAAAGTGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3145
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:AGCAGGACACTTCACTGTCG
Suggested primer 2:GACGATGCGGAGTTTGATGC