Insertion junction: CLIP2.042320_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.042320
Chromosome:chromosome 17
Location:1575740
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g802041 (1 of 82) IPR020846 - Major facilitator superfamily domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGCAATACTGGGTTGGCAGCAGCAGGCCTGGCAGGCTTCGCGCGTCAGT
Internal bar code:TCTTAGAAAAGGGTTGAGAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1369
LEAP-Seq percent confirming:36.3636
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCGCTCCCCTTCATAATC
Suggested primer 2:GCATGGTGATAAAGCCAGCG