Insertion junction: CLIP2.042355_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.042355
Chromosome:chromosome 2
Location:1795333
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800183 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTTCTTTAAGTCGGGCGACCCTACCGAGCCCTCTAATTATCGCCCCAT
Internal bar code:GAGTATGATCTGTCGTATCCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:4327
LEAP-Seq percent confirming:2.89855
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:67
LEAP-Seq n unique pos:69

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGACACCCACGTAAGAAA
Suggested primer 2:TGATCCTGTTGAGCTGCTGG