Insertion junction: CLIP2.042562_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.042562
Chromosome:chromosome 3
Location:3909072
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g170850 MMP19 Matrix metalloproteinase; (1 of 40) 3.4.24.38 - Gametolysin / Lysin intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGATGGCTTACCAGTCAGATACCACGCCATCAACATTGGGGTTGCCGG
Internal bar code:GAATACGGTCTGTGGGTTAACT

Confirmation - LEAP-Seq

LEAP-Seq distance:696
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTCGTACAGTCACGTGGG
Suggested primer 2:TCTGGTTGTACTCGTGCACC